Basic JS src problem

Thanks for the reply.
Does this look correct for the file inputJavaScript.js.php

<?php header("Content-type: application/javascript"); ?>

function subjectHandler() {
    var subjectArray = [];
    var a = true;
    document.getElementById('subjectText').innerHTML = "";
    document.getElementById('subjectText').innerHTML = "Subject:";
    document.getElementById('subject').innerHTML = "";
    if(exam.value=="AS"){
        subjectArray = <?php echo json_encode($ASsubjects, JSON_PRETTY_PRINT); ?>;        
    }else if(exam.value=="A2"){
        subjectArray = <?php echo json_encode($A2subjects, JSON_PRETTY_PRINT); ?>;
    }else if(exam.value=="AP"){
        subjectArray = <?php echo json_encode($APsubjects, JSON_PRETTY_PRINT); ?>;
    }else if(exam.value=="KET"||exam.value=="PET"||exam.value=="FCE"||exam.value=="IELTS"){
        selectOption = "<select name='subject' style='background-color: #FFDDF4'><option value='English'>English</option></select>";
            document.getElementById('subject').innerHTML = selectOption;
        a = false;
    }
        if(a){
            var strOption = "";
            subjectArray.forEach(function(item){
                strOption += "<option value='" + item + "'>" + item + "</option>";
                });
            selectOption = "<select name='subject' style='background-color: #FFDDF4'>" + strOption + "</select>";
            document.getElementById('subject').innerHTML = selectOption;
        }
}
                        
function sessionHandler() {
    var sessionArray = [];
    if(exam.value=="AS"|| exam.value=="A2"){
    document.getElementById('sessionText').innerHTML = "";
    document.getElementById('sessionText').innerHTML = "Session:";
    sessionArray = <?php echo json_encode($sessions, JSON_PRETTY_PRINT); ?>;
    document.getElementById('session').innerHTML = "";
    var strOption = "";
    sessionArray.forEach(function(item){    
        strOption += "<option value='" + item + "'>" + item + "</option>";
        });
    selectSessionOption = "<select name='session' style='background-color: #FFDDF4'>" + strOption + "</select>";
    document.getElementById('session').innerHTML = selectSessionOption;
    } else{
        document.getElementById('sessionText').innerHTML = "";
        document.getElementById('session').innerHTML = "";
    }
}

function resultHandler() {
    var resultArray = [];
    if(exam.value=="AS"|| exam.value=="A2"){
        resultArray = <?php echo json_encode($GCEresults, JSON_PRETTY_PRINT); ?>;        
    }else if(exam.value=="AP"){
        resultArray = <?php echo json_encode($APresults, JSON_PRETTY_PRINT); ?>;
    }else if(exam.value=="KET"||exam.value=="PET"){
        resultArray = <?php echo json_encode($KETPETresults, JSON_PRETTY_PRINT); ?>;/*KET and PET results are same*/
    }else if(exam.value=="FCE"){
        resultArray = <?php echo json_encode($FCEresults, JSON_PRETTY_PRINT); ?>;
    }else if(exam.value=="IELTS"){
        resultArray = <?php echo json_encode($IELTSresults, JSON_PRETTY_PRINT); ?>;
    }
    var strOption = "";
    resultArray.forEach(function(item){    
        strOption += "<option value='" + item + "'>" + item + "</option>";
        });
    part1Str = "<select name='result";
    part2Str = "' style='background-color: #FFDDF4'>" + strOption + "</select>";
}

function yearHandler() {
    document.getElementById('yearText').innerHTML = "";
    document.getElementById('yearText').innerHTML = "Year:";
    var yearArray = [];
    yearArray = <?php echo json_encode($years, JSON_PRETTY_PRINT); ?>;        
    document.getElementById('yearid').innerHTML = "";
    var strOption = "";
    yearArray.forEach(function(item){    
        strOption += "<option value='" + item + "'>" + item + "</option>";
        });
    selectYearOption = "<select name='annual' style='background-color: #FFDDF4'>" + strOption + "</select>";
    document.getElementById('yearid').innerHTML = selectYearOption;
}

var i=0;
function classAdder(){

    var table = document.getElementById("tableByclass");
    var row = document.createElement("tr");    

    var cell = document.createElement("td");
    if(i==0){
        var empty = document.createTextNode("First name:");
    }else{
        var empty = document.createTextNode("");
    }
    cell.appendChild(empty);
    row.appendChild(cell);

    cell = document.createElement("td");
    var detail = document.createElement("input");
    detail.type = "text";
    detail.name = "first" +i;
    cell.appendChild(detail);
    row.appendChild(cell);

    cell = document.createElement("td");
    if(i==0){
        var empty = document.createTextNode("Last name:");
    }else{
        var empty = document.createTextNode("");
    }
    cell.appendChild(empty);
    row.appendChild(cell);

    cell = document.createElement("td");
    var detail = document.createElement("input");


    detail.type = "text";
    detail.name = "last" +i;
    cell.setAttribute("id", "idNumber");
    cell.appendChild(detail);
    row.appendChild(cell);

    cell = document.createElement("td");
    if(i==0){
        var empty = document.createTextNode("Result:");
    }else{
        var empty = document.createTextNode("");
    }
    cell.appendChild(empty);
    row.appendChild(cell);

    cell = document.createElement("td");
    cell.setAttribute("class", "left");
    selectResultOption = part1Str + i + part2Str;
    cell.innerHTML = selectResultOption;
    row.appendChild(cell);
    table.appendChild(row); 
    table.rows[1].className = "topRow"; /* second row*/
    i++;
}

function clearTable(){
    for(var j=i; j>0; j--){
        tableByclass.deleteRow(j);
    }
    i=0;/*resets i to 0 so that when classAdder is called in callFunctions() the first row will include the text nodes First name and Last name*/
}

function callFunctions(){
    yearHandler();
    subjectHandler();
    resultHandler();
    sessionHandler();
    clearTable();/*clear all but first row*/
    classAdder();/*generates last name, first name and result forms when exam type is first pressed*/
}

document.getElementById('exam').onchange = callFunctions;

and the html.php file is,

<!DOCTYPE html>
<?php     
    include_once $_SERVER['DOCUMENT_ROOT'] . '/cuislegibney/includes/func.inc.php'; 
    include_once $_SERVER['DOCUMENT_ROOT'] . '/cuislegibney/includes/helpers.inc.php'; 
    include $_SERVER['DOCUMENT_ROOT'] . '/cuislegibney/includes/arraybuilder.inc.php'; 
?>
<html lang="en">
      <head>
        <link type="text/css" rel="stylesheet" href="/cuislegibney/css/stylesheet.css"/> 
        <meta charset="utf-8">
        <title>Input</title>
      </head>
      <body>
          <link rel="icon" type="image/x-icon" href="/cuislegibney/images/favicon.ico"/>
          <header>
              <h1>Results archive</h1>
          </header>
            <div class="input">
                <p><a href="/cuislegibney">Return to Main Menu</a></p>
                  <form action="?<?php htmlout($action);?>" method="post">
                      <input type="hidden" name="action" value="hauptFormular">
                      <input type="submit" value="<?php htmlout($button); ?>" >
                          <table>
                            <tr>
                                <td>
                                    <fieldset>
                                         <legend>By class</legend>
                                         <table class="inner" id="tableByclass">
                                             <tr>
                                                 <td>Exam type:</td>
                                                 <td class="left">                         
                                                    <select name="exam" id="exam" style="background-color: #FFDDF4">
                                                        <option></option>
                                                         <?php foreach($exams as $key=>$option):
                                                               echo "<option value='$key'>$option</option>";
                                                          endforeach; ?>
                                                    </select></td>
                                                 <td id="yearText"></td><td name="yearid" id="yearid" class="left"></td>
                                                 <td id="subjectText"></td><td name="subject" id="subject" class="left">to be changed</td> 
                                                 <td id="sessionText"></td><td name="session" id="session" class="left"></td>
                                             </tr>
                                         </table>
                                    </fieldset>
                                </td>
                            </tr>
                        </table>
                    <input type="submit" value="<?php htmlout($button); ?>">
                    <input type="button" onclick="classAdder();" value="Add new student">
                </form>
            </div>
        <script type="text/javascript" src="inputJavaScript.js.php"></script>
          <!-- <script type="text/javascript" src="test.js"></script> -->
    </body>
</html>

Also the file arraybuilder.inc.php is,

<?php
        $exams = ['AS' => 'AS', 'A2' => 'A2', 'AP' => 'AP', 'KET' => 'KET', 'PET' => 'PET', 'FCE' => 'FCE', 'IELTS' => 'IELTS']; 
          $years = array("2015","2014","2013","2012","2011","2010","2009","2008");
          $sessions = array("January","June");
          $GCEresults = array("A","B","C","D","E","U");//Will need these as UMS scores
          $GCSEresults = array("A","B","C","D","E","U");
          $GCSEsubjects = array("Mathematics","Biology");//Will need these as UMS scores
          $ASsubjects = array("Mathematics","Geography","Physics","Biology","Chemistry");
          $A2subjects = array("Pure Mathematics","Further Mathematics");
          $APsubjects = array("Calculus","Chemistry","Physics","Biology");
          $APresults = array("5","4","3","2","1");
          $KETPETresults = array("Pass","Merit","Distinction");
          $FCEresults = array("A","B","C","D");
          $IELTSresults = array("1","2","3","4");              

Thanks