If you are referring to the extra white space at the bottom of your central div, either removing bottom-padding: 20px; or reducing it's height by 20 will reduce it's size and even it up with the invisible div to the left, which is about 10 pixels below where it looks visible. You can fix that problem the same way.
The tools in the Outline section are especially useful because it will outline all block elements, custom elements, and more to let you see exactly what div is doing what.
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